Introduction As a biologist transitioning to computational biology, you're likely using High-Performance Computing (HPC) clusters equipped nowadays with powerful CPUs and GPUs. Correctly use a clusters is crucial for the success of your career. In this series of articles, we will go through the main concepts you need to know to correctly deploy your pipelines […]
Introduction Alphafold2 AlphaFold2 ( AF2 ) is a deep learning-based system developed by DeepMind to predict the 3D structure of proteins from their amino acid sequences. The algorithm uses Multiple Sequence Alignment (MSA) to determine the interactions between distant amino acids and infer the protein’s 3D structure ( https://www.nature.com/articles/s41586-021-03819-2 ) . The MSA information is paired with […]